JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSPEAR_chr21_44492893_44716572	0/0	c0007	2010	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0008	2010	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0009	2010	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0010	2010	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0011	1566	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0012	2010	1	0	0	0	0	1	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0013	2010	1	0	0	0	0	1	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0014	2010	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0015	2010	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0016	2010	1	0	0	0	0	1	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0017	2010	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	c0018	2010	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPO2_chr6_41037467_41049337	1/1	c0001	513	359	96	69	142	12	38	copy fasta	TSPO2	chr6	41037467	41049337
TSPO2_chr6_41037467_41049337	0/0	c0002	513	1	0	1	0	0	0	copy fasta	TSPO2	chr6	41037467	41049337
TSPOAP1_chr17_58296231_58333795	1/1	c0001	5574	152	31	29	65	5	20	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0002	5574	25	0	1	17	4	3	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0003	5574	16	1	10	0	5	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0004	5574	13	0	3	10	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0005	5574	9	0	2	7	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0006	5574	7	2	0	3	0	2	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0007	5574	6	0	0	5	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0008	5574	6	1	4	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0009	5574	5	0	3	0	1	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0010	5574	5	0	0	5	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0011	5574	4	0	0	3	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0012	5574	4	4	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0013	5574	4	0	0	0	1	3	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0014	5574	4	4	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0015	5574	3	3	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0016	5574	3	0	0	3	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0017	5574	3	0	0	3	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0018	5574	3	0	0	3	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0019	5574	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0020	5574	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0021	5574	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0022	5574	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0023	5574	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0024	5574	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0025	5574	2	0	0	2	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0026	5574	2	0	0	0	0	2	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0027	5574	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0028	5574	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0029	5574	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0030	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0031	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0032	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0033	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0034	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0035	5574	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	c0036	5592	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795