JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSPYL4_chr6_116244964_116259075	0/0	c0005	1245	7	6	1	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	c0006	1245	4	0	0	0	0	4	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	c0007	1245	3	0	2	0	1	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	c0008	1245	2	0	2	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	c0009	1245	2	0	0	0	1	1	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	c0010	1245	2	0	2	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	c0011	1245	1	0	0	0	0	1	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	c0012	1245	1	0	0	1	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	c0013	1245	1	0	0	0	0	1	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	c0014	1245	1	0	0	1	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL5_chr8_97268488_97282928	0/0	c0001	1254	226	35	53	99	6	33	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	c0002	1254	85	50	8	22	2	3	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	1/0	c0003	1254	80	6	8	53	5	7	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/1	c0004	1254	8	2	2	0	3	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	c0005	1254	6	0	0	6	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	c0006	1254	3	3	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	c0007	1254	1	0	1	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	c0008	1254	1	0	1	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	c0009	1254	1	0	1	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	c0010	1254	1	0	0	0	0	1	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL6_chr2_54248178_54261229	1/0	c0001	1233	227	55	41	102	11	17	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0002	1233	89	10	15	46	2	16	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/1	c0003	1227	58	5	10	34	2	6	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0004	1233	21	7	7	0	2	5	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0005	1233	9	0	5	3	0	1	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0006	1239	6	6	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0007	1233	5	5	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0008	1233	3	3	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0009	1233	2	2	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0010	1227	2	0	0	2	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0011	1233	2	1	1	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0012	1233	1	1	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0013	1233	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0014	1233	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0015	1233	1	0	0	0	1	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0016	1227	1	1	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0017	1233	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0018	1233	1	0	0	0	0	1	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0019	1239	1	1	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0020	1233	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0021	1233	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0022	1239	1	0	1	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	c0023	1227	1	1	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSR1_chr17_2317396_2341457	1/1	c0001	2415	263	76	55	85	11	34	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0002	2415	93	1	7	80	2	3	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0003	2415	15	3	0	7	1	4	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0004	2415	9	6	2	0	0	1	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0005	2415	4	4	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0006	2415	3	1	2	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0007	2415	2	1	1	0	0	0	copy fasta	TSR1	chr17	2317396	2341457