JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSR1_chr17_2317396_2341457	0/0	c0008	2415	2	0	0	2	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0009	2415	1	1	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0010	2415	1	0	0	0	0	1	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0011	2415	1	0	0	0	0	1	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0012	2415	1	0	1	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0013	2415	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0014	2415	1	0	1	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0015	2415	1	1	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0016	2415	1	0	0	0	0	1	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0017	2415	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0018	2415	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0019	2415	1	0	1	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0020	2415	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0021	2415	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0022	2415	1	1	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0023	2415	1	0	0	0	0	1	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0024	2415	1	1	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	c0025	2415	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR2_chrX_54435404_54453032	1/1	c0001	576	293	74	52	129	10	26	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	c0002	576	1	0	0	0	1	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	c0003	576	1	0	0	1	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR3_chr16_1344240_1356878	1/1	c0001	939	347	80	66	138	18	43	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	c0002	939	3	3	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	c0003	939	3	0	0	3	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	c0004	939	3	3	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	c0005	939	2	2	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	c0006	939	1	0	1	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	c0007	939	1	0	1	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	c0008	979	1	1	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	c0009	939	1	0	0	1	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	c0010	939	1	0	0	0	0	1	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	c0011	939	1	1	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSSC4_chr11_2395750_2408876	0/1	c0001	990	321	25	71	156	18	50	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0002	990	40	19	1	20	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0003	990	28	26	2	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0004	990	17	15	2	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0005	990	5	5	0	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0006	990	5	0	0	5	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0007	990	5	0	0	5	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0008	990	3	0	3	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0009	990	2	0	0	2	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0010	990	2	2	0	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	1/0	c0011	990	2	0	1	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0012	990	1	0	1	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0013	990	1	1	0	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0014	990	1	1	0	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0015	990	1	1	0	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0016	990	1	0	1	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	c0017	990	1	1	0	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSK1B_chr5_113427553_113439989	1/1	c0001	1104	274	58	47	122	8	37	copy fasta	TSSK1B	chr5	113427553	113439989