JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSSK1B_chr5_113427553_113439989	0/0	c0002	1104	25	1	5	12	5	2	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0003	1104	24	17	6	0	1	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0004	1104	17	5	1	10	0	1	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0005	1104	16	0	6	10	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0006	1104	6	6	0	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0007	1104	3	0	0	3	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0008	1104	2	0	0	2	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0009	1104	1	1	0	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0010	1104	1	0	1	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0011	1104	1	0	0	1	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0012	1104	1	0	0	0	0	1	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0013	1104	1	0	0	0	0	1	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0014	1104	1	0	0	1	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	c0015	1104	1	0	0	1	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK2_chr22_19126308_19137622	1/0	c0001	1077	308	62	57	142	13	33	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/1	c0002	1077	55	12	8	19	5	10	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0003	1077	42	7	9	21	0	5	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0004	1077	15	9	0	6	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0005	1077	8	0	0	8	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0006	1077	3	3	0	0	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0007	1077	3	0	2	1	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0008	1077	1	0	0	1	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0009	1077	1	1	0	0	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0010	1077	1	1	0	0	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0011	1077	1	1	0	0	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0012	1077	1	0	0	1	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	c0013	1077	1	0	0	1	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK3_chr1_32357539_32369312	1/1	c0001	807	255	80	51	74	12	36	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	c0002	807	24	0	1	23	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	c0003	807	7	7	0	0	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	c0004	807	2	2	0	0	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	c0005	807	1	1	0	0	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	c0006	807	1	1	0	0	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	c0007	807	1	1	0	0	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	c0008	807	1	0	0	1	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK4_chr14_24200696_24213248	1/1	c0001	1017	413	79	74	200	16	42	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	c0002	1014	9	9	0	0	0	0	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	c0003	1017	2	0	2	0	0	0	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	c0004	1017	2	2	0	0	0	0	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	c0005	1017	1	0	0	0	0	1	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	c0006	1017	1	0	0	0	0	1	copy fasta	TSSK4	chr14	24200696	24213248
TSSK6_chr19_19509219_19520548	0/0	c0001	822	190	57	35	63	7	28	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	1/1	c0002	822	177	28	26	93	9	19	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	c0003	822	6	6	0	0	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	c0004	822	5	0	0	5	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	c0005	822	2	2	0	0	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	c0006	822	2	0	0	2	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	c0007	822	1	1	0	0	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	c0008	822	1	0	0	0	0	1	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	c0009	822	1	0	0	1	0	0	copy fasta	TSSK6	chr19	19509219	19520548