JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BICRAL_chr6_42777052_42873556	1/1	c0001	3240	252	66	46	109	10	19	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	c0002	3240	9	7	0	1	0	1	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	c0003	3240	3	3	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	c0004	3240	2	0	0	2	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	c0005	3240	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	c0006	3240	1	0	0	1	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	c0007	3240	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	c0008	3240	1	0	0	1	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRA_chr19_47604134_47708277	0/0	c0001	4683	138	20	34	63	3	18	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0002	4683	44	1	10	25	3	5	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	1/1	c0003	4683	42	18	10	4	3	5	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0004	4683	19	16	3	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0005	4683	13	7	3	0	0	3	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0006	4683	9	9	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0007	4683	4	0	0	4	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0008	4683	3	3	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0009	4683	3	3	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0010	4683	2	2	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0011	4683	2	2	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0012	4683	2	0	0	0	0	2	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0013	4683	2	2	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0014	4683	2	1	1	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0015	4683	1	0	0	1	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0016	4683	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0017	4683	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0018	4683	1	0	1	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0019	4683	1	0	0	0	1	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0020	4695	1	0	0	0	0	1	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0021	4683	1	0	0	1	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0022	4683	1	0	1	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0023	4683	1	0	1	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0024	4683	1	0	0	1	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0025	4683	1	0	0	0	0	1	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0026	4683	1	0	0	1	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0027	4683	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0028	4683	1	0	0	1	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0029	4683	1	0	0	0	1	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0030	4683	1	0	0	0	0	1	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0031	4683	1	0	0	0	1	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0032	4683	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0033	4683	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0034	4683	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0035	4683	1	0	0	0	0	1	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0036	4683	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0037	4683	1	0	0	1	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0038	4683	1	0	0	0	0	1	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0039	4683	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0040	4683	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	c0041	4683	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BID_chr22_17729138_17779469	1/1	c0001	588	305	74	60	118	15	36	copy fasta	BID	chr22	17729138	17779469