JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TSSK6_chr19_19509219_19520548	0/0	c0010	822	1	0	1	0	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSTD1_chr1_161032631_161043964	1/1	c0001	348	385	81	67	174	18	43	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	c0002	348	2	0	0	2	0	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	c0003	348	2	2	0	0	0	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	c0004	348	1	0	0	0	0	1	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	c0005	348	1	1	0	0	0	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	c0006	348	1	0	1	0	0	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD2_chr9_97595080_97638368	0/0	c0001	1551	138	19	30	60	9	20	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	1/1	c0002	1551	70	6	11	45	3	3	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	c0003	1551	68	9	6	35	2	16	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	c0004	1551	46	44	2	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	c0005	1551	34	0	12	21	0	1	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	c0006	1551	7	5	2	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	c0007	1551	3	3	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	c0008	1551	3	3	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	c0009	1551	2	0	1	1	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	c0010	1551	1	1	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	c0011	1551	1	0	0	1	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	c0012	1551	1	0	0	1	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD3_chr6_99516049_99538185	1/1	c0001	294	434	88	84	196	16	48	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	c0002	294	2	0	0	2	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TST_chr22_37005865_37024447	1/1	c0001	894	394	67	74	197	18	36	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0002	894	15	15	0	0	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0003	894	11	6	1	0	0	4	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0004	894	4	0	4	0	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0005	894	3	3	0	0	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0006	894	3	3	0	0	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0007	894	1	0	0	1	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0008	894	1	0	0	1	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0009	894	1	0	0	1	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0010	894	1	1	0	0	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0011	894	1	0	1	0	0	0	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	c0012	894	1	1	0	0	0	0	copy fasta	TST	chr22	37005865	37024447
TTBK1_chr6_43238481_43293258	1/0	c0001	3966	105	12	24	50	4	14	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/1	c0002	3966	81	20	7	43	4	6	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0003	3963	33	3	7	17	0	6	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0004	3966	32	2	7	16	2	5	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0005	3963	15	14	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0006	3966	12	11	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0007	3963	7	0	5	0	0	2	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0008	3966	7	7	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0009	3963	5	2	0	1	0	2	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0010	3966	5	5	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0011	3963	4	4	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0012	3966	3	0	0	3	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0013	3966	3	0	0	0	2	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0014	3966	2	0	0	2	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0015	3963	2	0	2	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0016	3966	2	2	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0017	3966	2	2	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258