JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTBK1_chr6_43238481_43293258	0/0	c0018	3966	2	1	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0019	3966	2	2	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0020	3966	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0021	3966	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0022	3966	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0023	3966	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0024	3963	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0025	3966	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0026	3966	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0027	3966	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0028	3966	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0029	3963	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0030	3963	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0031	3963	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0032	3963	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0033	3966	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0034	3966	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0035	3963	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0036	3963	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0037	3963	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0038	3966	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0039	3963	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0040	3966	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0041	3966	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0042	3966	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	c0043	3963	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK2_chr15_42733730_42925778	0/0	c0001	3735	129	55	12	41	5	16	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	1/1	c0002	3735	68	7	11	39	3	6	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0003	3735	32	7	1	24	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0004	3735	5	0	0	5	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0005	3735	4	3	1	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0006	3735	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0007	3735	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0008	3735	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0009	3735	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0010	3735	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0011	3735	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0012	3735	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0013	3735	1	0	0	0	0	1	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0014	3735	1	0	1	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	c0015	3735	1	0	0	0	0	1	copy fasta	TTBK2	chr15	42733730	42925778
TTC12_chr11_113309583_113371387	1/1	c0001	2118	212	60	30	90	6	24	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0002	2118	93	5	25	44	4	15	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0003	2118	11	6	1	0	2	2	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0004	2118	4	4	0	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0005	2118	3	0	0	3	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0006	2118	3	2	1	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0007	2118	2	0	0	0	0	2	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0008	2118	2	0	2	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0009	2118	2	2	0	0	0	0	copy fasta	TTC12	chr11	113309583	113371387