JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC12_chr11_113309583_113371387	0/0	c0010	2118	1	0	0	1	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0011	2118	1	1	0	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0012	2118	1	1	0	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0013	2118	1	0	0	1	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0014	2118	1	1	0	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0015	2118	1	0	0	1	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0016	2118	1	0	0	0	0	1	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0017	2118	1	0	1	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0018	2118	1	0	0	0	0	1	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0019	2118	1	0	0	1	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0020	2118	1	0	0	1	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	c0021	2118	1	0	0	0	0	1	copy fasta	TTC12	chr11	113309583	113371387
TTC13_chr1_230901243_230983861	0/1	c0001	2583	126	7	24	73	6	15	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	1/0	c0002	2583	83	39	13	15	5	10	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0003	2583	69	9	5	43	1	11	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0004	2583	15	12	2	0	1	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0005	2583	14	13	1	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0006	2583	3	0	0	0	2	1	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0007	2583	3	1	2	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0008	2583	3	0	0	3	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0009	2583	3	0	1	2	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0010	2583	2	0	0	0	1	1	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0011	2583	2	0	0	2	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0012	2583	2	0	1	0	0	1	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0013	2583	2	2	0	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0014	2583	1	1	0	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0015	2583	1	0	0	0	0	1	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0016	2583	1	0	0	1	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0017	2583	1	1	0	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0018	2583	1	1	0	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0019	2583	1	0	0	1	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0020	2583	1	0	1	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0021	2583	1	1	0	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	c0022	2583	1	1	0	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC14_chr3_180597163_180616130	1/1	c0001	2313	273	69	51	115	12	24	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0002	2313	23	7	11	0	1	4	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0003	2313	17	7	5	0	1	4	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0004	2313	6	0	0	6	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0005	2313	4	4	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0006	2313	3	3	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0007	2313	3	2	1	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0008	2313	1	1	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0009	2313	1	1	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0010	2313	1	0	0	1	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0011	2313	1	1	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	c0012	2313	1	1	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC16_chr9_127711079_127736590	1/0	c0001	2622	122	17	28	59	4	13	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0002	2622	77	38	11	17	1	10	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/1	c0003	2622	72	3	20	24	5	19	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0004	2622	9	7	2	0	0	0	copy fasta	TTC16	chr9	127711079	127736590