JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC16_chr9_127711079_127736590	0/0	c0005	2622	9	9	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0006	2622	7	0	6	1	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0007	2622	5	5	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0008	2622	5	0	0	5	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0009	2622	3	0	0	3	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0010	2622	3	3	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0011	2622	2	0	2	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0012	2622	2	2	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0013	2622	2	2	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0014	2622	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0015	2622	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0016	2622	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0017	2622	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0018	2622	1	0	0	0	0	1	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0019	2622	1	0	0	0	0	1	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0020	2622	1	0	1	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0021	2622	1	0	0	0	0	1	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0022	2622	1	0	0	0	0	1	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0023	2622	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0024	2622	1	0	0	1	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0025	2622	1	0	1	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0026	2611	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0027	2622	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0028	2622	1	0	1	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/0	c0029	2622	1	1	0	0	0	0	copy fasta	TTC16	chr9	127711079	127736590
TTC17_chr11_43353920_43499931	1/0	c0001	3426	246	53	50	94	14	34	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/1	c0002	3426	23	0	13	7	0	2	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	c0003	3426	21	19	2	0	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	c0004	3426	2	2	0	0	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	c0005	3426	1	0	0	1	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	c0006	3426	1	0	1	0	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	c0007	3426	1	1	0	0	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	c0008	3426	1	1	0	0	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	c0009	3426	1	0	0	1	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	c0010	3426	1	0	0	1	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC19_chr17_15994824_16034404	1/1	c0001	1143	304	76	65	116	12	33	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	c0002	1143	14	13	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	c0003	1143	3	3	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	c0004	1143	2	2	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	c0005	1143	1	0	0	0	0	1	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	c0006	1143	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	c0007	1143	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	c0008	1143	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	c0009	1143	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC1_chr5_160004139_160070543	1/1	c0001	879	375	77	62	187	11	36	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	c0002	879	6	2	1	0	1	2	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	c0003	879	1	0	1	0	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	c0004	879	1	0	0	1	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC1_chr5_160004139_160070543	0/0	c0005	879	1	1	0	0	0	0	copy fasta	TTC1	chr5	160004139	160070543
TTC21A_chr3_39102680_39143900	0/1	c0001	3942	143	6	32	84	4	16	copy fasta	TTC21A	chr3	39102680	39143900