JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC23L_chr5_34834164_34905511	0/0	c0009	1086	3	0	0	3	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0010	1086	3	2	1	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0011	1086	3	3	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0012	1086	3	3	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0013	1086	1	1	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0014	1086	1	0	1	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0015	1086	1	0	0	1	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0016	1086	1	0	0	0	1	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0017	1086	1	1	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0018	1086	1	0	0	1	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	c0019	1086	1	1	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23_chr15_99131323_99254581	0/1	c0001	1344	242	40	42	129	9	21	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0002	1344	44	22	6	10	0	6	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	1/0	c0003	1344	40	2	13	15	1	8	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0004	1344	12	5	2	4	1	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0005	1344	11	11	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0006	1344	5	3	1	0	1	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0007	1344	2	0	2	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0008	1344	2	2	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0009	1344	2	0	0	2	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0010	1344	1	0	1	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0011	1344	1	1	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0012	1344	1	1	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0013	1344	1	0	0	1	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0014	1344	1	1	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0015	1344	1	0	0	0	0	1	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0016	1344	1	0	0	1	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	c0017	1344	1	0	1	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC24_chr1_156574723_156592719	0/0	c0001	1749	229	24	39	136	5	25	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/1	c0002	1749	110	5	34	53	7	10	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	1/0	c0003	1749	27	26	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0004	1748	19	8	3	5	2	1	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0005	1749	13	11	2	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0006	1749	10	0	0	7	0	3	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0007	1749	6	6	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0008	1749	5	5	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0009	1749	4	4	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0010	1748	4	4	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0011	1748	3	0	0	0	0	3	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0012	1749	2	1	0	1	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0013	1749	1	0	1	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0014	1749	1	0	1	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0015	1749	1	0	0	1	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0016	1749	1	0	0	0	0	1	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0017	1749	1	1	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0018	1749	1	0	0	1	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0019	1749	1	0	0	0	0	1	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0020	1749	1	1	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0021	1749	1	1	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	c0022	1749	1	1	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719