JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC27_chr2_32623050_32826051	0/0	c0001	2532	119	36	26	44	6	7	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/1	c0002	2532	85	11	18	43	6	6	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0003	2532	47	18	7	21	0	1	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0004	2532	43	1	3	38	0	1	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	1/0	c0005	2532	7	6	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0006	2532	4	4	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0007	2532	3	0	1	0	1	1	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0008	2532	3	3	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0009	2532	2	2	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0010	2532	1	1	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0011	2532	1	1	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0012	2532	1	0	1	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0013	2532	1	1	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0014	2532	1	0	0	0	0	1	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0015	2532	1	1	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0016	2532	1	0	0	0	0	1	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0017	2532	1	0	0	0	1	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0018	2532	1	0	0	1	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0019	2532	1	0	0	1	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	c0020	2532	1	1	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC28_chr22_27973014_28684840	0/0	c0001	7446	83	24	17	32	3	7	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0002	7446	23	8	3	10	0	2	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0003	7446	15	1	6	0	1	7	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0004	7446	13	1	1	6	0	5	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0005	7446	9	4	0	5	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0006	7446	6	6	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0007	7446	5	0	3	0	2	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0008	7446	5	5	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0009	7446	3	1	0	2	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0010	7446	3	0	0	0	3	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0011	7446	3	3	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0012	7446	2	2	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0013	7446	2	2	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0014	7446	1	0	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0015	7446	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0016	7446	1	0	0	0	1	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0017	7446	1	0	0	0	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0018	7446	1	0	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0019	7446	1	0	0	0	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0020	7446	1	0	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0021	7446	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0022	7446	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0023	7446	1	0	0	0	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0024	7446	1	0	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0025	7446	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0026	7446	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0027	7446	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0028	7446	1	0	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0029	7446	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0030	7446	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840