JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC28_chr22_27973014_28684840	0/0	c0031	7446	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0032	7446	1	0	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0033	7446	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0034	7446	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0035	7446	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0036	7446	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	c0037	7446	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC29_chr4_146701617_146950864	0/0	c0001	1428	91	13	16	47	4	11	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	1/1	c0002	1428	88	25	17	35	4	5	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0003	1428	33	11	0	17	0	5	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0004	1428	32	5	10	12	1	4	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0005	1428	17	16	1	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0006	1428	8	7	1	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0007	1428	8	7	1	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0008	1428	4	0	0	4	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0009	1428	2	1	0	0	1	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0010	1428	2	1	0	1	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0011	1428	1	0	0	1	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0012	1428	1	1	0	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0013	1428	1	1	0	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0014	1428	1	0	0	1	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0015	1428	1	1	0	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0016	1428	1	0	0	0	0	1	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	c0017	1428	1	1	0	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC31_chr2_74478081_74499559	0/1	c0001	1560	191	74	29	75	2	10	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	1/0	c0002	1560	121	15	38	36	12	19	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	c0003	1560	5	5	0	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	c0004	1560	3	2	1	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	c0005	1560	2	0	0	0	0	2	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	c0006	1560	2	0	0	0	0	2	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	c0007	1560	2	0	0	0	0	2	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	c0008	1560	2	1	1	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	c0009	1461	1	0	1	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	c0010	1560	1	1	0	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	c0011	1560	1	0	0	0	0	1	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	c0012	1560	1	0	0	1	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC32_chr2_19891631_19906983	1/1	c0001	456	280	77	48	112	14	27	copy fasta	TTC32	chr2	19891631	19906983
TTC32_chr2_19891631_19906983	0/0	c0002	456	137	19	23	74	4	17	copy fasta	TTC32	chr2	19891631	19906983
TTC32_chr2_19891631_19906983	0/0	c0003	456	3	2	1	0	0	0	copy fasta	TTC32	chr2	19891631	19906983
TTC32_chr2_19891631_19906983	0/0	c0004	456	3	0	0	3	0	0	copy fasta	TTC32	chr2	19891631	19906983
TTC32_chr2_19891631_19906983	0/0	c0005	456	1	0	0	1	0	0	copy fasta	TTC32	chr2	19891631	19906983
TTC33_chr5_40706576_40760961	1/1	c0001	789	383	91	78	156	16	40	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	c0002	789	10	0	0	10	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	c0003	789	1	1	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC36_chr11_118522474_118535993	1/1	c0001	570	404	95	72	177	12	46	copy fasta	TTC36	chr11	118522474	118535993
TTC36_chr11_118522474_118535993	0/0	c0002	570	2	2	0	0	0	0	copy fasta	TTC36	chr11	118522474	118535993
TTC36_chr11_118522474_118535993	0/0	c0003	570	1	0	1	0	0	0	copy fasta	TTC36	chr11	118522474	118535993
TTC36_chr11_118522474_118535993	0/0	c0004	570	1	1	0	0	0	0	copy fasta	TTC36	chr11	118522474	118535993
TTC36_chr11_118522474_118535993	0/0	c0005	570	1	0	1	0	0	0	copy fasta	TTC36	chr11	118522474	118535993
TTC36_chr11_118522474_118535993	0/0	c0006	570	1	0	0	1	0	0	copy fasta	TTC36	chr11	118522474	118535993