JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BID_chr22_17729138_17779469	0/0	c0002	588	33	11	4	16	0	2	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	c0003	588	12	4	3	1	0	4	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	c0004	588	4	4	0	0	0	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	c0005	588	4	0	0	4	0	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	c0006	588	2	0	0	1	1	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	c0007	588	1	0	1	0	0	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	c0008	588	1	1	0	0	0	0	copy fasta	BID	chr22	17729138	17779469
BIK_chr22_43105750_43134712	1/1	c0001	483	380	87	78	151	16	46	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	c0002	483	3	0	3	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	c0003	483	1	0	0	1	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	c0004	453	1	0	1	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	c0005	483	1	1	0	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIN1_chr2_127043032_127112154	1/1	c0001	1782	198	56	35	78	8	19	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0002	1782	65	18	1	35	0	11	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0003	1782	28	0	10	16	0	2	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0004	1782	21	1	13	4	1	2	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0005	1782	14	13	1	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0006	1782	3	3	0	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0007	1782	2	0	1	0	0	1	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0008	1782	2	0	0	2	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0009	1782	2	0	0	1	0	1	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0010	1782	1	0	0	1	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0011	1782	1	0	0	0	0	1	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0012	1782	1	0	0	0	0	1	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0013	1782	1	0	0	1	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0014	1782	1	1	0	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0015	1782	1	1	0	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0016	1782	1	1	0	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0017	1782	1	0	0	0	1	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	c0018	1782	1	0	1	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN2_chr12_51276038_51329174	0/1	c0001	1698	250	46	56	104	10	33	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0002	1698	34	7	3	24	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	1/0	c0003	1698	32	26	1	0	0	4	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0004	1698	30	3	4	20	0	3	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0005	1698	23	8	3	8	2	2	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0006	1698	8	0	0	8	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0007	1698	4	0	0	4	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0008	1698	4	0	3	0	0	1	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0009	1698	4	0	0	4	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0010	1698	1	1	0	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0011	1698	1	0	0	1	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0012	1698	1	0	0	1	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0013	1698	1	0	1	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0014	1698	1	0	1	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0015	1698	1	1	0	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0016	1698	1	0	0	1	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0017	1698	1	0	0	1	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0018	1698	1	1	0	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0019	1698	1	1	0	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	c0020	1708	1	0	0	0	0	1	copy fasta	BIN2	chr12	51276038	51329174