JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC3_chr21_37068254_37208107	0/0	c0005	6078	33	14	9	9	1	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0006	6078	11	9	2	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0007	6078	6	0	2	0	2	2	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0008	6078	3	0	1	2	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0009	6078	3	0	2	0	0	1	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0010	6078	3	3	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0011	6078	3	2	1	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0012	6078	2	0	0	0	0	2	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0013	6078	1	1	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0014	6078	1	1	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0015	6078	1	0	0	1	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0016	6078	1	0	0	1	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0017	6078	1	0	0	1	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0018	6078	1	0	0	1	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0019	6078	1	1	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0020	6078	1	0	1	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0021	6078	1	1	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0022	6078	1	0	0	0	1	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0023	6078	1	0	1	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	c0024	6078	1	1	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC4_chr1_54710861_54747657	0/1	c0001	1164	225	22	43	136	6	17	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	1/0	c0002	1164	91	40	29	2	7	12	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	c0003	1164	48	8	0	34	0	6	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	c0004	1164	13	6	3	0	1	3	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	c0005	1164	6	6	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	c0006	1164	6	6	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	c0007	1164	3	0	0	3	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	c0008	1164	2	0	0	0	0	2	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	c0009	1164	1	1	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	c0010	1164	1	0	0	1	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	c0011	1164	1	1	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	c0012	1164	1	0	1	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC5_chr14_20281227_20310951	0/0	c0001	1323	150	17	34	80	5	14	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/1	c0002	1323	145	45	23	64	2	10	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	1/0	c0003	1323	61	11	5	29	3	12	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	c0004	1323	34	1	10	15	0	8	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	c0005	1323	6	6	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	c0006	1323	6	6	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	c0007	1323	5	5	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	c0008	1323	3	3	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	c0009	1323	2	0	0	2	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	c0010	1323	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	c0011	1323	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	c0012	1323	1	0	1	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	c0013	1323	1	0	1	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC6_chr14_37590629_37847717	1/0	c0001	5661	39	24	2	11	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0002	5661	32	1	9	16	4	2	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0003	5661	22	7	9	0	0	6	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0004	5661	21	4	12	4	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0005	5661	16	7	0	8	0	1	copy fasta	TTC6	chr14	37590629	37847717