JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC6_chr14_37590629_37847717	0/0	c0006	5661	16	14	2	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0007	5661	13	0	1	10	0	2	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0008	5661	8	0	0	8	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0009	5661	5	0	0	5	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0010	5661	4	3	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0011	5661	3	3	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0012	5661	2	0	2	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0013	5661	2	2	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0014	5661	2	0	0	2	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0015	5661	2	2	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0016	5661	2	2	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0017	5661	2	0	0	2	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0018	5661	1	0	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0019	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0020	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0021	5661	1	0	0	0	1	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0022	5661	1	0	0	0	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0023	5661	1	0	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0024	5661	1	0	0	0	1	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0025	5661	1	0	0	0	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0026	5661	1	0	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0027	5661	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0028	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0029	5661	1	0	0	0	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0030	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0031	5661	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0032	5661	1	0	0	0	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0033	5661	1	0	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0034	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0035	5661	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0036	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0037	5661	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/1	c0038	5661	1	0	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0039	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0040	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0041	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0042	5661	1	0	0	0	0	1	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0043	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0044	5661	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0045	5661	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	c0046	5661	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC7A_chr2_46936224_47081123	1/1	c0001	2577	80	13	23	27	7	8	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0002	2577	53	9	2	40	1	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0003	2577	30	8	2	14	0	6	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0004	2577	25	10	7	1	2	5	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0005	2577	17	3	5	6	1	2	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0006	2577	14	11	3	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0007	2577	11	1	6	0	1	3	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0008	2577	8	0	0	7	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0009	2577	6	5	0	0	0	1	copy fasta	TTC7A	chr2	46936224	47081123