JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC7A_chr2_46936224_47081123	0/0	c0010	2577	4	2	2	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0011	2577	4	1	1	1	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0012	2577	4	0	0	4	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0013	2577	3	3	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0014	2577	3	2	1	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0015	2577	3	3	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0016	2577	3	0	1	0	0	2	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0017	2577	3	0	0	2	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0018	2577	2	0	0	2	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0019	2577	2	0	1	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0020	2577	2	0	2	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0021	2577	2	2	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0022	2577	2	0	0	2	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0023	2577	2	2	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0024	2577	2	2	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0025	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0026	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0027	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0028	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0029	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0030	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0031	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0032	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0033	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0034	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0035	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0036	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0037	2577	1	0	0	0	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0038	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0039	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0040	2577	1	0	1	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0041	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0042	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0043	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0044	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0045	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0046	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0047	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0048	2577	1	0	0	0	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0049	2577	1	0	0	0	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0050	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0051	2577	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0052	2577	1	0	1	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	c0053	2577	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7B_chr14_90519564_90821430	0/0	c0001	2532	46	3	12	16	2	13	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0002	2532	44	20	2	19	0	3	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/1	c0003	2532	34	4	4	20	2	3	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0004	2532	25	19	1	3	0	2	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0005	2532	10	0	1	9	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0006	2532	10	4	5	0	0	1	copy fasta	TTC7B	chr14	90519564	90821430