JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTC7B_chr14_90519564_90821430	1/0	c0007	2532	10	2	2	3	2	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0008	2532	3	0	1	1	0	1	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0009	2532	3	3	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0010	2532	2	2	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0011	2532	2	2	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0012	2532	2	2	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0013	2532	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0014	2532	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0015	2532	1	0	0	0	0	1	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0016	2532	1	0	1	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0017	2532	1	0	1	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0018	2532	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0019	2532	1	0	1	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0020	2532	1	0	1	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	c0021	2532	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC8_chr14_88819651_88882988	1/1	c0001	1548	393	92	68	176	14	41	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	c0002	1548	2	1	1	0	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	c0003	1548	1	0	0	1	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	c0004	1548	1	0	0	1	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	c0005	1548	1	0	1	0	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	c0006	1548	1	0	0	0	0	1	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	c0007	1548	1	1	0	0	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC9B_chr19_40211058_40223384	1/1	c0001	720	415	97	74	181	18	43	copy fasta	TTC9B	chr19	40211058	40223384
TTC9B_chr19_40211058_40223384	0/0	c0002	720	1	1	0	0	0	0	copy fasta	TTC9B	chr19	40211058	40223384
TTC9B_chr19_40211058_40223384	0/0	c0003	720	1	0	0	1	0	0	copy fasta	TTC9B	chr19	40211058	40223384
TTC9B_chr19_40211058_40223384	0/0	c0004	720	1	0	0	0	0	1	copy fasta	TTC9B	chr19	40211058	40223384
TTC9C_chr11_62723486_62743636	1/1	c0001	516	223	38	40	107	7	29	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	c0002	516	77	36	4	36	0	1	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	c0003	516	58	9	18	24	1	6	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	c0004	516	5	5	0	0	0	0	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	c0005	516	1	0	0	0	0	1	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	c0006	516	1	0	0	0	0	1	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	c0007	516	1	0	0	1	0	0	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	c0008	516	1	0	1	0	0	0	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	c0009	516	1	0	1	0	0	0	copy fasta	TTC9C	chr11	62723486	62743636
TTC9_chr14_70636916_70680366	0/1	c0001	669	267	77	37	120	10	22	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	1/0	c0002	669	65	14	11	26	1	12	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	c0003	669	55	0	21	21	5	8	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	c0004	669	37	4	2	29	0	2	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	c0005	669	9	0	0	8	0	1	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	c0006	669	8	1	0	6	0	1	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	c0007	669	2	0	0	2	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	c0008	669	1	0	1	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	c0009	669	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	c0010	669	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTF1_chr9_132370548_132411840	0/1	c0001	2718	165	35	32	68	8	21	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0002	2718	66	6	6	48	2	4	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0003	2718	52	0	4	45	0	3	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0004	2718	32	5	7	12	2	6	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0005	2718	24	12	3	7	0	2	copy fasta	TTF1	chr9	132370548	132411840