JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTF1_chr9_132370548_132411840	0/0	c0006	2718	12	1	0	8	0	3	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	1/0	c0007	2718	9	7	1	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0008	2718	6	6	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0009	2718	5	5	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0010	2718	4	4	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0011	2718	4	0	2	0	1	1	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0012	2718	3	3	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0013	2718	3	0	1	0	1	1	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0014	2718	2	0	0	0	2	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0015	2718	2	1	1	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0016	2718	2	0	0	0	0	2	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0017	2706	1	1	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0018	2718	1	1	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0019	2718	1	0	0	0	0	1	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0020	2718	1	1	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0021	2696	1	0	0	1	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0022	2718	1	0	0	1	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0023	2718	1	0	0	1	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0024	2718	1	0	0	1	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	c0025	2718	1	0	1	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF2_chr1_117055326_117112453	0/0	c0001	3489	131	8	43	60	7	13	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	1/0	c0002	3489	95	35	21	23	6	9	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0003	3489	48	14	5	21	0	8	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0004	3489	6	6	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0005	3489	5	5	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0006	3489	3	3	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0007	3489	3	3	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0008	3489	3	3	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0009	3489	2	2	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0010	3489	2	2	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0011	3489	2	2	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0012	3489	2	0	0	0	1	1	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0013	3489	2	2	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0014	3489	2	2	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0015	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0016	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0017	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0018	3489	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0019	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0020	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0021	3489	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0022	3489	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0023	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0024	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0025	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/1	c0026	3489	1	0	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0027	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0028	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0029	3489	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0030	3489	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453