JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTF2_chr1_117055326_117112453	0/0	c0031	3489	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0032	3489	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0033	3489	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0034	3489	1	0	0	0	0	1	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0035	3489	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	c0036	3489	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTI1_chr20_37978021_38038456	1/1	c0001	3270	361	78	61	171	12	37	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0002	3270	7	7	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0003	3270	3	0	3	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0004	3270	2	0	0	2	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0005	3270	2	2	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0006	3270	2	0	0	1	0	1	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0007	3270	2	2	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0008	3270	2	2	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0009	3270	1	0	0	0	0	1	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0010	3270	1	1	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0011	3270	1	1	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0012	3270	1	0	1	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0013	3270	1	1	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0014	3270	1	0	0	1	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0015	3270	1	0	0	0	0	1	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0016	3236	1	0	0	1	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0017	3270	1	0	0	0	0	1	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0018	3270	1	0	0	1	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0019	3270	1	1	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0020	3270	1	0	1	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0021	3270	1	1	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0022	3270	1	0	0	1	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	c0023	3270	1	0	0	0	0	1	copy fasta	TTI1	chr20	37978021	38038456
TTI2_chr8_33493722_33518135	0/1	c0001	1527	213	37	28	113	6	28	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	1/0	c0002	1527	150	31	26	70	3	19	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	c0003	1527	22	17	2	1	2	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	c0004	1527	5	5	0	0	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	c0005	1527	2	0	1	0	0	1	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	c0006	1527	1	0	0	1	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	c0007	1527	1	0	0	0	1	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	c0008	1527	1	0	1	0	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	c0009	1527	1	0	1	0	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	c0010	1527	1	0	0	1	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	c0011	1527	1	0	1	0	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTK_chr6_79999649_80047527	1/1	c0001	2574	284	68	44	126	7	37	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	c0002	2574	16	0	5	2	3	6	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	c0003	2574	8	8	0	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	c0004	2574	7	7	0	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	c0005	2574	3	2	0	0	0	1	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	c0006	2574	3	0	3	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	c0007	2574	2	0	0	2	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	c0008	2574	1	1	0	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	c0009	2574	1	1	0	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	c0010	2574	1	0	0	1	0	0	copy fasta	TTK	chr6	79999649	80047527