JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTK_chr6_79999649_80047527	0/0	c0011	2574	1	0	0	1	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	c0012	2574	1	1	0	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTLL10_chr1_1168880_1202936	0/0	c0001	2022	103	0	22	70	0	11	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	1/0	c0002	2022	69	7	29	8	10	14	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0003	2022	35	2	5	24	2	2	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0004	2022	19	1	0	17	1	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0005	2022	18	3	1	2	1	11	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0006	2022	14	13	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0007	2022	11	2	0	7	0	2	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0008	2022	9	9	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0009	2022	7	0	3	4	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0010	2022	7	3	0	4	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0011	2022	6	4	2	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0012	2022	5	5	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0013	2022	5	0	0	3	0	2	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0014	2022	5	0	0	5	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0015	2022	5	3	0	2	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0016	2022	5	5	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0017	2022	4	3	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0018	2022	3	3	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0019	2022	3	0	0	3	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0020	2022	3	1	0	0	0	2	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0021	2022	3	3	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0022	2022	2	2	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0023	2022	2	2	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0024	2022	2	1	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0025	2022	2	2	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0026	2022	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0027	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0028	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0029	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0030	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0031	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0032	2022	1	0	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/1	c0033	2022	1	0	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0034	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0035	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0036	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0037	2022	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0038	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0039	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0040	2022	1	0	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0041	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0042	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0043	2022	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0044	2022	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0045	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0046	2022	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0047	2022	1	0	0	0	1	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0048	2022	1	0	0	0	0	1	copy fasta	TTLL10	chr1	1168880	1202936