JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTLL10_chr1_1168880_1202936	0/0	c0049	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0050	2022	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0051	2022	1	0	0	0	0	1	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0052	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0053	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0054	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0055	2022	1	0	0	0	1	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0056	2022	1	0	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0057	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0058	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0059	2022	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	c0060	2022	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL11_chr9_121810674_122098308	1/1	c0001	2133	88	26	20	16	8	16	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0002	2133	20	18	2	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0003	2139	19	5	5	1	2	6	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0004	2133	11	0	10	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0005	2133	11	9	1	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0006	2133	6	5	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0007	2133	6	6	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0008	2139	3	3	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0009	2133	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0010	2133	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0011	2133	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0012	2133	1	0	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0013	2133	1	0	0	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0014	2133	1	0	0	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0015	2133	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0016	2133	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0017	2133	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	c0018	2133	1	0	0	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL12_chr22_43161622_43192134	1/0	c0001	1935	139	29	22	68	4	15	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0002	1935	83	9	24	35	6	9	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0003	1935	48	3	5	26	1	13	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/1	c0004	1935	20	2	6	7	2	2	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0005	1935	9	0	4	0	3	2	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0006	1935	8	6	2	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0007	1935	8	3	2	0	1	2	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0008	1935	6	0	0	6	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0009	1935	4	4	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0010	1935	4	4	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0011	1935	4	3	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0012	1935	4	3	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0013	1935	4	3	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0014	1935	3	0	0	3	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0015	1935	3	0	0	3	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0016	1935	3	0	0	3	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0017	1935	3	3	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0018	1935	3	0	1	0	0	2	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0019	1935	3	0	2	0	0	1	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0020	1935	2	1	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134