JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTLL12_chr22_43161622_43192134	0/0	c0021	1935	2	2	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0022	1935	2	2	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0023	1935	2	0	1	0	0	1	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0024	1935	2	2	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0025	1935	2	0	0	2	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0026	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0027	1935	1	0	0	0	0	1	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0028	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0029	1935	1	0	0	1	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0030	1935	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0031	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0032	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0033	1935	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0034	1935	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0035	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0036	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0037	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0038	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0039	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0040	1935	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0041	1935	1	0	0	1	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0042	1935	1	0	0	1	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0043	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0044	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0045	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0046	1935	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0047	1935	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	c0048	1935	1	0	0	0	1	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL13_chr15_90244556_90270477	1/1	c0001	2256	200	56	43	70	10	19	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0002	2256	177	11	36	108	4	18	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0003	2256	12	10	1	1	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0004	2256	8	0	0	8	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0005	2256	6	6	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0006	2256	5	0	0	5	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0007	2256	5	2	0	3	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0008	2256	4	3	1	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0009	2256	3	3	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0010	2256	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0011	2256	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0012	2256	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0013	2256	1	0	0	1	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0014	2256	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0015	2256	1	0	0	1	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0016	2256	1	1	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0017	2256	1	0	1	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0018	2256	1	1	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0019	2256	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0020	2256	1	0	0	1	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	c0021	2256	1	1	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL1_chr22_43034516_43094391	0/0	c0001	1272	116	25	16	62	1	12	copy fasta	TTLL1	chr22	43034516	43094391