JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTLL1_chr22_43034516_43094391	1/1	c0002	1272	96	15	17	33	8	21	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0003	1272	34	7	11	10	3	3	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0004	1272	33	8	13	0	5	7	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0005	1272	26	0	4	22	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0006	1272	22	19	3	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0007	1272	6	2	0	4	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0008	1272	6	5	1	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0009	1272	4	4	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0010	1272	4	4	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0011	1272	2	1	1	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0012	1272	2	1	0	0	0	1	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0013	1272	2	0	1	0	1	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0014	1272	2	1	1	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0015	1272	2	2	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0016	1272	1	1	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0017	1272	1	1	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	c0018	1272	1	0	0	1	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL2_chr6_167320086_167347688	0/0	c0001	1779	118	8	17	73	5	15	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0002	1779	83	14	19	29	5	16	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	1/1	c0003	1779	53	1	6	34	2	8	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0004	1779	38	9	5	23	0	1	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0005	1779	22	0	7	15	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0006	1779	19	12	3	0	2	2	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0007	1779	17	10	3	0	3	1	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0008	1779	15	13	2	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0009	1779	13	12	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0010	1779	9	0	0	9	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0011	1779	4	4	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0012	1779	4	0	4	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0013	1779	3	2	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0014	1779	3	3	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0015	1779	2	2	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0016	1779	2	2	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0017	1779	2	1	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0018	1779	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0019	1779	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0020	1779	1	0	0	1	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0021	1779	1	0	0	1	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0022	1779	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0023	1779	1	0	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0024	1779	1	0	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0025	1779	1	0	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0026	1779	1	0	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0027	1779	1	0	0	0	1	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0028	1779	1	0	0	1	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0029	1779	1	0	0	1	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0030	1779	1	0	0	0	0	1	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0031	1779	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0032	1779	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	c0033	1779	1	0	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688