JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BIN3_chr8_22615418_22674121	0/1	c0001	762	197	51	23	86	8	28	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	1/0	c0002	762	156	34	34	73	4	10	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	c0003	762	20	2	14	1	1	2	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	c0004	762	5	1	0	1	3	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	c0005	762	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	c0006	762	1	0	0	1	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	c0007	762	1	0	0	0	0	1	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	c0008	762	1	0	0	0	0	1	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	c0009	762	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	c0010	762	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	c0011	762	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	c0012	762	1	0	1	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIRC2_chr11_102342214_102383670	1/0	c0001	1857	322	85	68	119	11	38	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/1	c0002	1857	8	0	4	0	3	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	c0003	1857	3	3	0	0	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	c0004	1857	3	0	0	3	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	c0005	1857	2	0	0	2	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	c0006	1857	2	0	0	2	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	c0007	1857	1	0	0	1	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	c0008	1857	1	0	0	1	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	c0009	1857	1	0	0	1	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	c0010	1857	1	0	0	1	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC3_chr11_102312484_102344403	1/1	c0001	1815	301	69	71	109	11	39	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0002	1815	47	0	2	44	0	1	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0003	1815	14	0	7	6	0	1	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0004	1815	11	10	1	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0005	1815	2	0	1	0	1	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0006	1815	2	0	0	2	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0007	1815	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0008	1815	1	0	0	1	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0009	1815	1	0	0	1	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0010	1828	1	0	0	1	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0011	1815	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0012	1815	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	c0013	1815	1	0	0	0	0	1	copy fasta	BIRC3	chr11	102312484	102344403
BIRC5_chr17_78209253_78230635	0/1	c0001	429	372	91	78	145	14	43	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	1/0	c0002	429	56	0	8	43	2	2	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	c0003	429	3	3	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	c0004	429	1	0	0	0	0	1	copy fasta	BIRC5	chr17	78209253	78230635
BIRC6_chr2_32352023_32623878	0/0	c0001	14574	65	12	18	22	4	9	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	1/1	c0002	14574	58	16	11	21	3	5	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0003	14574	24	6	3	11	1	3	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0004	14574	19	0	9	10	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0005	14574	11	0	0	11	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0006	14574	10	0	7	0	1	2	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0007	14574	7	7	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0008	14574	5	5	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0009	14574	5	5	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0010	14574	5	2	1	0	1	1	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0011	14574	5	4	1	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878