JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTLL2_chr6_167320086_167347688	0/0	c0034	1779	1	0	0	1	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL3_chr3_9805262_9841365	1/1	c0001	2448	220	39	42	114	4	19	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0002	2448	85	16	19	33	10	7	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0003	2448	29	16	4	5	3	1	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0004	2448	20	11	4	1	0	4	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0005	2448	9	0	0	9	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0006	2448	4	0	0	4	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0007	2448	4	0	0	4	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0008	2448	4	0	2	2	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0009	2448	4	2	0	2	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0010	2448	3	0	1	0	0	2	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0011	2448	2	2	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0012	2448	2	0	0	2	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0013	2448	2	2	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0014	2448	2	0	0	0	1	1	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0015	2448	2	0	0	2	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0016	2448	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0017	2448	1	1	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0018	2448	1	0	1	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0019	2448	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0020	2448	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0021	2448	1	0	1	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0022	2448	1	1	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	c0023	2431	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL4_chr2_218705835_218760416	0/0	c0001	3600	113	42	23	30	4	14	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	1/1	c0002	3600	89	5	16	44	5	17	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0003	3600	13	13	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0004	3600	6	6	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0005	3600	5	5	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0006	3600	4	0	0	4	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0007	3600	4	3	1	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0008	3600	3	3	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0009	3600	3	3	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0010	3600	2	2	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0011	3600	2	2	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0012	3600	2	0	2	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0013	3600	2	2	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0014	3600	2	2	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0015	3600	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0016	3600	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0017	3600	1	0	0	0	0	1	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0018	3600	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0019	3600	1	0	1	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0020	3600	1	0	0	0	1	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0021	3600	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0022	3600	1	0	0	1	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0023	3600	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0024	3600	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0025	3600	1	0	0	1	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	c0026	3600	1	0	1	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416