JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTLL5_chr14_75656246_75960079	0/0	c0001	3846	36	13	0	20	0	3	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0002	3846	36	16	5	9	0	6	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	1/0	c0003	3846	33	20	5	2	1	4	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0004	3846	32	2	10	18	1	1	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/1	c0005	3846	24	4	3	14	1	1	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0006	3846	12	0	1	8	1	2	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0007	3846	5	5	0	0	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0008	3846	4	3	1	0	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0009	3846	4	0	0	3	0	1	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0010	3846	3	1	0	2	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0011	3846	2	2	0	0	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0012	3846	1	0	0	1	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0013	3846	1	0	0	1	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0014	3846	1	0	0	0	0	1	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0015	3846	1	0	0	0	0	1	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0016	3846	1	0	1	0	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0017	3846	1	0	0	1	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	c0018	3846	1	0	0	1	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL6_chr17_48757234_48822229	1/0	c0001	2676	159	33	31	65	8	21	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0002	2676	76	12	22	32	4	6	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0003	2676	28	3	3	14	2	6	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0004	2676	18	13	2	2	1	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/1	c0005	2676	11	1	5	2	1	1	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0006	2676	6	6	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0007	2676	5	3	2	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0008	2676	3	3	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0009	2676	3	1	2	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0010	2659	2	0	2	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0011	2676	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0012	2676	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0013	2676	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0014	2676	1	0	1	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0015	2676	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0016	2659	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0017	2676	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0018	2676	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0019	2676	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0020	2676	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0021	2676	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0022	2676	1	0	0	0	0	1	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0023	2676	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0024	2676	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0025	2676	1	0	0	0	0	1	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0026	2676	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0027	2676	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0028	2676	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	c0029	2676	1	1	0	0	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL7_chr1_83860024_84004132	1/1	c0001	2664	277	75	59	98	10	33	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	c0002	2664	12	0	0	12	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	c0003	2664	3	0	0	0	3	0	copy fasta	TTLL7	chr1	83860024	84004132