JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTLL7_chr1_83860024_84004132	0/0	c0004	2664	2	0	0	0	0	2	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	c0005	2664	2	0	0	2	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	c0006	2664	1	1	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	c0007	2664	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	c0008	2664	1	0	1	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	c0009	2664	1	0	0	1	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	c0010	2664	1	0	0	1	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	c0011	2664	1	0	0	0	1	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL8_chr22_50013575_50063298	0/0	c0001	2259	50	9	13	21	4	3	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	1/0	c0002	2259	43	6	13	15	2	6	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/1	c0003	2259	38	3	4	27	0	3	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0004	2259	32	10	7	12	0	3	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0005	2259	17	10	0	3	0	4	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0006	2259	15	0	5	6	1	3	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0007	2259	5	5	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0008	2259	3	0	0	3	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0009	2259	2	1	1	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0010	2259	1	0	1	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0011	2259	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0012	2259	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0013	2259	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0014	2259	1	0	0	1	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0015	2259	1	0	0	1	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0016	2259	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0017	2259	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0018	2259	1	0	0	0	1	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0019	2259	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0020	2259	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0021	2259	1	0	0	0	1	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0022	2259	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0023	2259	1	0	0	1	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0024	2259	1	0	0	1	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0025	2259	1	0	0	0	1	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0026	2259	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0027	2259	1	0	0	1	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	c0028	2259	1	1	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL9_chr20_31865634_31950000	0/0	c0001	1320	126	71	29	7	6	13	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	1/1	c0002	1320	125	12	32	55	10	14	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0003	1320	2	2	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0004	1320	2	0	0	2	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0005	1320	1	0	1	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0006	1320	1	0	0	1	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0007	1320	1	1	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0008	1320	1	0	0	1	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0009	1320	1	0	0	0	0	1	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0010	1320	1	0	0	1	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0011	1320	1	1	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0012	1320	1	1	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	c0013	1320	1	0	0	1	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTL_chr2_112477156_112546739	0/0	c0001	1134	159	48	30	57	6	18	copy fasta	TTL	chr2	112477156	112546739