JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
TTN_chr2_178520989_178812423	0/0	c0047	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0048	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0049	107223	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0050	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0051	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0052	106470	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0053	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0054	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0055	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0056	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0057	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0058	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0059	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0060	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0061	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0062	107223	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0063	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0064	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0065	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0066	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0067	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0068	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0069	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0070	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0071	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0072	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0073	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0074	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0075	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0076	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0077	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0078	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0079	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0080	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0081	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	1/0	c0082	107976	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0083	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0084	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0085	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0086	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0087	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0088	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0089	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0090	107223	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0091	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0092	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0093	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0094	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0095	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0096	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423