JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
TTN_chr2_178520989_178812423	0/0	c0097	108012	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0098	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0099	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0100	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0101	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0102	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0103	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0104	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0105	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0106	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0107	107223	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0108	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0109	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0110	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0111	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0112	107958	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0113	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0114	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0115	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0116	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0117	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0118	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0119	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0120	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0121	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0122	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0123	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0124	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0125	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0126	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0127	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0128	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0129	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0130	107223	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0131	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0132	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0133	107223	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0134	107976	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0135	107223	1	0	0	1	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0136	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0137	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0138	107976	1	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/1	c0139	107976	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0140	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0141	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0142	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0143	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0144	107976	1	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0145	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0146	107976	1	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423