JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTN_chr2_178520989_178812423	0/0	c0197	107976	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0198	107958	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0199	107958	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0200	107976	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0201	107976	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0202	107976	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0203	107976	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0204	107976	1	0	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0205	107958	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0206	107958	1	0	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0207	107958	1	0	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0208	107958	1	0	0	1	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0209	107958	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0210	107958	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	c0211	107958	1	0	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178739405_178812423	0/0	c0001	16815	65	8	9	41	0	7	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0002	16815	36	5	10	11	4	6	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0003	16815	32	4	4	17	0	7	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0004	16815	26	0	0	24	0	2	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0005	16815	21	0	12	9	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0006	16815	17	4	9	0	1	3	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0007	16815	14	1	8	0	0	5	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0008	16815	11	0	0	11	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0009	16815	7	0	1	6	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0010	16815	7	7	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0011	16815	6	6	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0012	16815	5	5	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0013	16815	5	5	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0014	16815	4	4	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/1	c0015	16815	4	1	2	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0016	16815	3	3	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0017	16815	3	3	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0018	16815	3	0	0	3	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0019	16815	3	3	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0020	16815	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0021	16815	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0022	16815	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0023	16815	2	0	2	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0024	16815	2	0	0	2	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0025	16815	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0026	16815	2	0	0	2	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0027	16815	2	0	0	2	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0028	16815	2	0	0	2	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0029	16815	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0030	16815	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0031	16815	2	0	0	2	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0032	16815	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0033	16815	2	0	2	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0034	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0035	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423