JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTN_chr2_178739405_178812423	0/0	c0036	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0037	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0038	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0039	16815	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0040	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0041	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0042	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0043	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0044	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0045	16815	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0046	16815	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0047	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0048	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0049	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0050	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	1/0	c0051	16815	1	0	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0052	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0053	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0054	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0055	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0056	16815	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0057	16815	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0058	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0059	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0060	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0061	16815	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0062	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0063	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0064	16815	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0065	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0066	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0067	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0068	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0069	16815	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0070	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0071	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0072	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0073	16815	1	0	0	0	1	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0074	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0075	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0076	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0077	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0078	16815	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0079	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0080	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0081	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0082	16815	1	0	1	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0083	16815	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0084	16815	1	0	0	0	0	1	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	c0085	16749	1	0	0	1	0	0	copy fasta	TTN	chr2	178739405	178812423