Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABTB3_chr12_107313434_107664642	0/0	c0018	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0019	3315	1	0	1	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0020	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0021	3315	1	0	1	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0022	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0023	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0024	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0025	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0026	3315	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0027	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0028	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0029	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0030	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0031	3315	1	0	1	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0032	3315	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0033	3315	1	0	0	0	0	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0034	3315	1	0	0	0	0	1	copy fasta	ABTB3	chr12	107313434	107664642
ACAA1_chr3_38117715_38142127	1/0	c0001	1275	256	67	53	98	8	29	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/1	c0002	1275	74	1	12	50	3	7	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0003	1275	12	7	3	0	0	2	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0004	1275	6	0	0	6	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0005	1275	4	0	3	0	1	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0006	1275	4	4	0	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0007	1275	2	0	0	2	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0008	1275	2	2	0	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0009	1275	1	0	0	1	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0010	1275	1	1	0	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0011	1275	1	1	0	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0012	1275	1	0	0	0	0	1	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0013	1275	1	1	0	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0014	1275	1	0	0	1	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0015	1275	1	0	0	1	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0016	1275	1	0	0	1	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0017	1275	1	0	1	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0018	1275	1	1	0	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0019	1275	1	1	0	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	c0020	1275	1	0	0	0	0	1	copy fasta	ACAA1	chr3	38117715	38142127
ACAA2_chr18_49777164_49818533	1/1	c0001	1194	394	86	74	173	18	41	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	c0002	1194	29	1	3	23	0	2	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	c0003	1194	4	4	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	c0004	1194	3	0	0	0	0	3	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	c0005	1194	1	1	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	c0006	1194	1	0	1	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	c0007	1194	1	0	0	1	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	c0008	1194	1	0	0	1	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACACA_chr17_37079992_37411836	0/0	c0001	7152	122	43	22	44	3	10	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/1	c0002	7152	90	21	19	34	5	10	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0003	7152	56	2	11	27	4	12	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0004	7152	19	16	3	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0005	7152	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836