JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BIRC6_chr2_32352023_32623878	0/0	c0012	14574	4	4	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0013	14574	4	4	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0014	14574	3	3	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0015	14574	3	3	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0016	14574	3	0	0	3	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0017	14574	3	0	2	0	1	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0018	14574	2	2	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0019	14574	2	2	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0020	14574	2	0	2	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0021	14574	2	2	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0022	14574	2	0	2	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0023	14574	2	0	1	0	1	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0024	14574	2	0	0	2	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0025	14574	2	1	1	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0026	14574	2	2	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0027	14574	2	0	0	2	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0028	14574	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0029	14574	1	0	1	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0030	14574	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0031	14574	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0032	14574	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0033	14574	1	0	1	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0034	14574	1	0	0	1	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0035	14574	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0036	14574	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0037	14574	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0038	14574	1	0	0	1	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0039	14574	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0040	14574	1	0	0	1	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0041	14574	1	0	1	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0042	14574	1	0	0	1	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0043	14574	1	0	0	1	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0044	14574	1	0	0	1	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0045	14574	1	0	1	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0046	14574	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	c0047	14574	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC7_chr20_63230905_63245495	1/0	c0001	897	95	34	23	17	7	13	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0002	897	88	4	20	46	2	16	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0003	897	56	10	6	34	1	5	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/1	c0004	897	12	0	3	2	3	3	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0005	897	10	9	1	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0006	897	7	6	0	1	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0007	897	6	6	0	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0008	898	5	0	1	4	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0009	897	3	3	0	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0010	898	3	1	2	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0011	898	3	0	1	2	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0012	897	3	2	0	0	0	1	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0013	897	1	1	0	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0014	897	1	0	0	0	1	0	copy fasta	BIRC7	chr20	63230905	63245495