JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTYH1_chr19_54410464_54441904	0/0	c0009	1353	1	0	0	1	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0010	1353	1	1	0	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0011	1353	1	0	1	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0012	1353	1	1	0	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0013	1353	1	0	0	1	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0014	1353	1	0	0	0	1	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0015	1353	1	0	0	1	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0016	1353	1	0	0	1	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	c0017	1353	1	1	0	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH2_chr17_74208571_74267020	1/0	c0001	1605	170	20	36	87	8	18	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0002	1605	40	3	10	13	3	11	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0003	1605	34	15	8	2	2	7	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0004	1605	13	7	3	0	0	3	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0005	1605	10	1	0	3	3	3	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0006	1605	9	8	1	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0007	1605	8	3	0	5	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0008	1605	8	0	1	5	1	1	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0009	1605	7	7	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0010	1605	6	6	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0011	1605	5	4	1	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/1	c0012	1605	5	1	1	1	0	1	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0013	1605	4	4	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0014	1605	4	4	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0015	1605	4	0	0	4	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0016	1605	4	4	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0017	1605	3	3	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0018	1605	3	2	0	1	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0019	1605	2	0	0	0	1	1	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0020	1605	2	2	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0021	1605	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0022	1605	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0023	1605	1	0	1	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0024	1605	1	0	1	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0025	1605	1	0	0	0	0	1	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0026	1605	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0027	1605	1	0	0	1	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0028	1605	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0029	1605	1	0	1	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0030	1605	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	c0031	1605	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH3_chr7_2626986_2669802	1/1	c0001	1572	351	83	79	140	11	36	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0002	1572	18	0	0	18	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0003	1572	13	10	3	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0004	1572	4	0	0	4	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0005	1572	3	3	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0006	1572	3	0	0	0	1	2	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0007	1572	2	0	0	0	2	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0008	1572	2	0	0	0	0	2	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0009	1572	1	1	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0010	1572	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802