JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TTYH3_chr7_2626986_2669802	0/0	c0011	1572	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0012	1572	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0013	1572	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	c0014	1572	1	1	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TUBA1A_chr12_49179795_49194080	0/0	c0001	1356	185	45	28	88	8	16	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	1/1	c0002	1356	155	28	33	66	8	18	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	c0003	1356	10	10	0	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	c0004	1356	4	4	0	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	c0005	1356	2	2	0	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	c0006	1356	1	1	0	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	c0007	1356	1	0	1	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	c0008	1356	1	1	0	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	c0009	1407	1	1	0	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	c0010	1356	1	1	0	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	c0011	1356	1	1	0	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1B_chr12_49122782_49136395	0/0	c0001	1356	172	26	24	97	8	17	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	1/1	c0002	1356	172	33	41	72	5	19	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	c0003	1356	32	31	1	0	0	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	c0004	1356	1	0	0	1	0	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	c0005	1356	1	0	0	0	1	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	c0006	1356	1	0	0	1	0	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	c0007	1356	1	1	0	0	0	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	c0008	1356	1	1	0	0	0	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	c0009	1356	1	1	0	0	0	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	c0010	1356	1	0	0	1	0	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	c0011	1356	1	1	0	0	0	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1C_chr12_49260082_49279600	0/0	c0001	1350	260	83	24	115	8	30	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	1/1	c0002	1350	97	4	40	35	6	10	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0003	1350	11	1	2	7	1	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0004	1350	7	0	0	7	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0005	1350	4	3	1	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0006	1350	3	3	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0007	1350	1	0	0	0	1	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0008	1350	1	0	0	0	0	1	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0009	1350	1	0	0	0	0	1	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0010	1350	1	0	1	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0011	1350	1	0	0	1	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0012	1350	1	1	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0013	1350	1	0	0	1	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	c0014	1350	1	1	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA3C_chr13_19168772_19186824	1/0	c0001	1353	279	79	43	124	8	24	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/1	c0002	1353	129	17	26	61	8	16	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0003	1140	10	0	0	10	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0004	1353	9	0	2	2	2	3	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0005	1353	4	0	0	4	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0006	1353	4	0	2	2	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0007	1353	2	0	1	0	0	1	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0008	1353	2	0	2	0	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0009	1353	1	1	0	0	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0010	1353	1	0	1	0	0	0	copy fasta	TUBA3C	chr13	19168772	19186824