JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUBA3C_chr13_19168772_19186824	0/0	c0011	1353	1	0	1	0	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0012	1353	1	1	0	0	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0013	1353	1	0	1	0	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0014	1353	1	0	0	0	0	1	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0015	1353	1	0	0	1	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0016	1353	1	0	1	0	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	c0017	931	1	0	0	0	0	1	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3D_chr2_131471119_131487934	1/1	c0001	1353	155	37	27	45	12	32	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0002	1353	155	4	33	101	3	14	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0003	1353	35	24	7	0	0	4	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0004	1353	10	4	3	2	1	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0005	1353	6	6	0	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0006	1353	4	4	0	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0007	1353	4	3	1	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0008	1353	3	1	2	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0009	1353	3	2	0	1	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0010	1353	3	3	0	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0011	1353	2	2	0	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0012	1353	2	0	0	2	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0013	1353	2	0	0	2	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0014	1353	1	1	0	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0015	1353	1	1	0	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0016	1353	1	0	1	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0017	1353	1	0	1	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0018	1353	1	1	0	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0019	1353	1	0	0	1	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0020	1353	1	0	1	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	c0021	1353	1	1	0	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3E_chr2_130186745_130203439	0/1	c0001	1353	159	4	26	95	5	28	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0002	1350	140	13	34	71	8	14	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0003	1353	18	18	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0004	1353	17	17	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0005	1350	15	12	3	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0006	1353	10	0	3	7	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0007	1351	7	6	1	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0008	1353	7	0	5	1	1	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0009	1353	7	1	3	0	3	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0010	1353	6	6	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0011	1350	5	2	0	3	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0012	1353	3	3	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0013	1350	3	0	0	3	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0014	1353	2	2	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0015	1350	2	0	0	2	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0016	1353	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0017	1353	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0018	1353	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0019	1353	1	0	0	0	0	1	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0020	1353	1	0	0	1	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0021	1353	1	0	1	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	1/0	c0022	1353	1	0	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439