JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUBA3E_chr2_130186745_130203439	0/0	c0023	1353	1	0	0	1	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0024	1353	1	0	1	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0025	1353	1	0	0	0	0	1	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0026	1353	1	0	0	0	0	1	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0027	1353	1	0	0	1	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0028	1353	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0029	1353	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0030	1353	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0031	1350	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0032	1350	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0033	1350	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0034	1350	1	0	0	0	0	1	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0035	1350	1	0	0	1	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0036	1350	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0037	1350	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0038	1350	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0039	1350	1	0	1	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0040	1350	1	0	0	1	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0041	1350	1	0	0	1	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	c0042	1350	1	0	0	0	1	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA4A_chr2_219244710_219258918	1/1	c0001	1347	368	81	72	154	12	47	copy fasta	TUBA4A	chr2	219244710	219258918
TUBA4A_chr2_219244710_219258918	0/0	c0002	1347	3	3	0	0	0	0	copy fasta	TUBA4A	chr2	219244710	219258918
TUBA4A_chr2_219244710_219258918	0/0	c0003	1347	2	2	0	0	0	0	copy fasta	TUBA4A	chr2	219244710	219258918
TUBA4A_chr2_219244710_219258918	0/0	c0004	1347	1	0	0	1	0	0	copy fasta	TUBA4A	chr2	219244710	219258918
TUBA4A_chr2_219244710_219258918	0/0	c0005	1347	1	0	0	1	0	0	copy fasta	TUBA4A	chr2	219244710	219258918
TUBA4A_chr2_219244710_219258918	0/0	c0006	1347	1	0	0	0	0	1	copy fasta	TUBA4A	chr2	219244710	219258918
TUBA4B_chr2_219248243_219277197	0/1	c0001	726	147	18	44	35	13	36	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0002	726	107	25	16	61	0	5	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0003	726	36	12	9	8	1	6	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0004	726	32	13	0	19	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0005	726	11	10	1	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	1/0	c0006	726	6	4	1	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0007	726	4	4	0	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0008	726	1	0	0	0	0	1	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0009	726	1	1	0	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0010	726	1	1	0	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0011	726	1	0	1	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0012	726	1	0	0	1	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0013	726	1	0	0	1	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	c0014	726	1	0	0	1	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA8_chr22_18105809_18136732	1/1	c0001	1350	309	83	65	115	15	29	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0002	1350	89	2	15	58	1	13	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0003	1350	6	0	0	6	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0004	1350	5	5	0	0	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0005	1350	4	0	0	4	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0006	1350	4	4	0	0	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0007	1350	2	0	0	2	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0008	1350	2	0	0	2	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0009	1350	1	0	0	1	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0010	1350	1	1	0	0	0	0	copy fasta	TUBA8	chr22	18105809	18136732