JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUBA8_chr22_18105809_18136732	0/0	c0011	1350	1	1	0	0	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0012	1350	1	0	0	1	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	c0013	1350	1	0	0	1	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBAL3_chr10_5388101_5409828	0/1	c0001	1341	230	45	41	117	8	18	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	1/0	c0002	1341	83	12	17	37	8	8	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0003	1341	30	0	4	16	0	10	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0004	1341	21	11	7	0	0	3	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0005	1341	17	0	1	14	0	2	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0006	1341	5	5	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0007	1341	4	0	0	4	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0008	1341	4	4	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0009	1341	3	3	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0010	1341	2	0	0	2	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0011	1341	1	0	0	1	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0012	1341	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0013	1341	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0014	1341	1	0	0	1	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0015	1341	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0016	1341	1	0	0	1	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0017	1341	1	0	0	1	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0018	1341	1	0	0	1	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0019	1341	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0020	1341	1	0	0	0	0	1	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0021	1341	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0022	1341	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0023	1341	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0024	1341	1	0	0	0	0	1	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0025	1341	1	0	0	1	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0026	1341	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	c0027	1341	1	0	0	0	0	1	copy fasta	TUBAL3	chr10	5388101	5409828
TUBB1_chr20_59014429_59031654	0/0	c0001	1356	268	67	50	112	13	26	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/1	c0002	1356	60	9	14	25	3	8	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0003	1356	41	5	7	19	0	10	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0004	1356	6	0	0	6	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0005	1356	6	0	5	0	0	1	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0006	1356	5	4	1	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0007	1356	5	1	1	0	0	3	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0008	1356	2	2	0	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0009	1356	2	2	0	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0010	1356	1	1	0	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0011	1356	1	0	0	0	0	1	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0012	1356	1	0	0	0	0	1	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0013	1356	1	0	0	1	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	1/0	c0014	1356	1	0	0	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0015	1356	1	0	0	1	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	c0016	1356	1	1	0	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB2A_chr6_3148666_3162544	1/0	c0001	1338	225	69	32	96	4	23	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2A_chr6_3148666_3162544	0/1	c0002	1338	173	15	22	107	10	18	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2A_chr6_3148666_3162544	0/0	c0003	1338	4	2	2	0	0	0	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2A_chr6_3148666_3162544	0/0	c0004	1338	3	0	0	0	0	3	copy fasta	TUBB2A	chr6	3148666	3162544