JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUBB2A_chr6_3148666_3162544	0/0	c0005	1338	3	3	0	0	0	0	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2A_chr6_3148666_3162544	0/0	c0006	1338	2	0	0	2	0	0	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2A_chr6_3148666_3162544	0/0	c0007	1338	1	0	1	0	0	0	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2A_chr6_3148666_3162544	0/0	c0008	1338	1	1	0	0	0	0	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2A_chr6_3148666_3162544	0/0	c0009	1338	1	0	1	0	0	0	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2A_chr6_3148666_3162544	0/0	c0010	1338	1	0	0	1	0	0	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2B_chr6_3219277_3232653	1/1	c0001	1338	304	84	54	115	12	37	copy fasta	TUBB2B	chr6	3219277	3232653
TUBB2B_chr6_3219277_3232653	0/0	c0002	1338	51	6	8	35	0	2	copy fasta	TUBB2B	chr6	3219277	3232653
TUBB2B_chr6_3219277_3232653	0/0	c0003	1338	2	0	1	0	0	1	copy fasta	TUBB2B	chr6	3219277	3232653
TUBB2B_chr6_3219277_3232653	0/0	c0004	1338	2	2	0	0	0	0	copy fasta	TUBB2B	chr6	3219277	3232653
TUBB2B_chr6_3219277_3232653	0/0	c0005	1338	1	0	1	0	0	0	copy fasta	TUBB2B	chr6	3219277	3232653
TUBB3_chr16_89918342_89941097	1/1	c0001	1353	389	98	79	149	17	44	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	c0002	1353	4	0	0	0	0	4	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	c0003	1353	2	0	1	0	1	0	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	c0004	1353	1	0	0	1	0	0	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	c0005	1353	1	0	0	1	0	0	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	c0006	1342	1	0	0	1	0	0	copy fasta	TUBB3	chr16	89918342	89941097
TUBB4A_chr19_6489319_6507309	0/1	c0001	1335	244	50	55	102	13	23	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	1/0	c0002	1335	166	33	25	81	5	21	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	c0003	1335	14	14	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	c0004	1335	1	1	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	c0005	1335	1	0	1	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	c0006	1335	1	0	1	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	c0007	1335	1	0	0	1	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4B_chr9_137236287_137248707	1/1	c0001	1338	405	89	78	176	15	45	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	c0002	1338	6	6	0	0	0	0	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	c0003	1338	2	2	0	0	0	0	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	c0004	1338	1	0	0	1	0	0	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	c0005	1338	1	1	0	0	0	0	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	c0006	1338	1	0	0	0	1	0	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	c0007	1338	1	0	0	1	0	0	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	c0008	1338	1	0	0	0	0	1	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB6_chr18_12303241_12331616	1/1	c0001	1341	313	76	51	141	9	34	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	c0002	1341	71	9	15	38	1	8	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	c0003	1341	8	0	5	3	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	c0004	1341	3	0	0	3	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	c0005	1341	2	2	0	0	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	c0006	1341	1	0	1	0	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	c0007	1341	1	0	1	0	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	c0008	1341	1	0	0	1	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	c0009	1341	1	1	0	0	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	c0010	1341	1	0	1	0	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB8B_chr18_42221_54615	0/0	c0001	1335	161	18	24	86	6	27	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0002	1335	83	1	8	68	0	6	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	1/0	c0003	1335	46	13	19	2	6	5	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0004	1335	30	16	4	1	1	8	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0005	1335	11	9	2	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0006	1335	9	9	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0007	1335	7	7	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0008	1326	5	3	2	0	0	0	copy fasta	TUBB8B	chr18	42221	54615