JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUBB8B_chr18_42221_54615	0/0	c0009	1335	3	0	3	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0010	1335	3	0	0	3	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0011	1335	3	0	3	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0012	1335	3	2	1	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0013	1335	3	0	3	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0014	1335	3	0	0	3	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0015	1335	3	3	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0016	1335	2	2	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0017	1335	2	1	0	0	1	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0018	1335	2	0	0	2	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0019	1335	2	2	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0020	1335	1	1	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0021	1335	1	1	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0022	1335	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0023	1335	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0024	1335	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0025	1335	1	0	0	0	0	1	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0026	1335	1	0	0	0	0	1	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0027	1335	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0028	1335	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0029	1335	1	0	1	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0030	1335	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0031	1335	1	1	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0032	1335	1	0	0	1	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	c0033	1335	1	1	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8_chr10_41888_54296	1/0	c0001	1335	138	25	10	86	2	14	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/1	c0002	1335	93	9	22	43	7	11	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0003	1335	89	16	19	33	6	15	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0004	1335	58	32	13	11	0	2	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0005	1335	5	5	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0006	1335	4	1	3	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0007	1335	2	2	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0008	1335	2	0	1	0	1	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0009	1335	2	0	0	2	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0010	1335	1	0	0	0	0	1	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0011	1335	1	1	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0012	1335	1	1	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0013	1335	1	1	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0014	1335	1	0	0	0	0	1	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0015	1335	1	1	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0016	1335	1	0	0	1	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0017	1335	1	0	0	1	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0018	1335	1	0	0	1	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0019	1335	1	1	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	c0020	1335	1	1	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB_chr6_30715352_30730422	0/1	c0001	1335	384	93	79	148	18	45	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	c0002	1335	46	3	1	41	0	1	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	c0003	1335	1	0	0	1	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBD1_chr17_59854479_59897943	1/0	c0001	1362	171	45	31	58	15	21	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/1	c0002	1362	92	3	11	63	0	14	copy fasta	TUBD1	chr17	59854479	59897943