JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUBD1_chr17_59854479_59897943	0/0	c0003	1362	80	31	17	27	1	4	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	c0004	1362	10	8	2	0	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	c0005	1362	3	0	0	0	0	3	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	c0006	1362	1	0	0	1	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	c0007	1362	1	0	0	1	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	c0008	1362	1	0	1	0	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	c0009	1362	1	1	0	0	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBE1_chr6_112065663_112092482	1/1	c0001	1428	393	81	72	183	13	42	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0002	1428	8	8	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0003	1428	3	0	0	3	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0004	1428	2	2	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0005	1428	2	0	1	0	1	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0006	1428	2	0	0	2	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0007	1428	2	0	0	0	0	2	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0008	1428	2	0	0	2	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0009	1428	1	0	0	1	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0010	1428	1	1	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0011	1428	1	1	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0012	1428	1	0	1	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0013	1428	1	1	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	c0014	1428	1	0	0	1	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBG1_chr17_42604683_42620238	0/0	c0001	1356	213	62	42	75	7	27	copy fasta	TUBG1	chr17	42604683	42620238
TUBG1_chr17_42604683_42620238	1/1	c0002	1356	169	26	32	89	5	15	copy fasta	TUBG1	chr17	42604683	42620238
TUBG1_chr17_42604683_42620238	0/0	c0003	1356	4	0	0	4	0	0	copy fasta	TUBG1	chr17	42604683	42620238
TUBG1_chr17_42604683_42620238	0/0	c0004	1356	1	1	0	0	0	0	copy fasta	TUBG1	chr17	42604683	42620238
TUBG1_chr17_42604683_42620238	0/0	c0005	1356	1	1	0	0	0	0	copy fasta	TUBG1	chr17	42604683	42620238
TUBG2_chr17_42654284_42672006	0/0	c0001	1356	158	21	38	69	7	23	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	1/1	c0002	1356	150	18	34	76	5	15	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	c0003	1356	41	32	6	2	0	1	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	c0004	1356	12	12	0	0	0	0	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	c0005	1356	2	0	0	2	0	0	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	c0006	1356	2	2	0	0	0	0	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	c0007	1356	1	0	0	0	0	1	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	c0008	1356	1	0	0	1	0	0	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	c0009	1356	1	0	0	0	0	1	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	c0010	1356	1	1	0	0	0	0	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	c0011	1356	1	0	0	0	0	1	copy fasta	TUBG2	chr17	42654284	42672006
TUBGCP2_chr10_133273635_133313872	0/1	c0001	2709	186	48	52	54	13	18	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0002	2709	28	7	7	11	1	2	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0003	2709	18	14	1	3	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0004	2709	16	14	0	1	0	1	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0005	2709	4	0	2	0	0	2	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	1/0	c0006	2709	3	0	0	2	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0007	2709	2	0	0	0	0	2	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0008	2709	2	0	2	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0009	2709	2	0	1	0	0	1	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0010	2709	2	0	1	0	0	1	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0011	2709	2	0	0	0	0	2	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0012	2709	2	0	2	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0013	2709	2	2	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872