JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUBGCP2_chr10_133273635_133313872	0/0	c0014	2709	2	2	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0015	2709	2	0	1	0	0	1	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0016	2709	1	1	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0017	2709	1	0	0	1	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0018	2709	1	1	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0019	2709	1	0	0	0	0	1	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0020	2709	1	1	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0021	2709	1	0	1	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0022	2709	1	1	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0023	2709	1	0	0	0	0	1	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0024	2709	1	0	0	1	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0025	2709	1	1	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	c0026	2709	1	0	0	1	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP3_chr13_112480011_112593153	1/0	c0001	2724	255	59	42	119	7	27	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/1	c0002	2724	32	5	4	18	3	1	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	c0003	2724	8	3	1	4	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	c0004	2724	6	5	1	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	c0005	2724	6	6	0	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	c0006	2724	2	0	0	2	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	c0007	2724	1	1	0	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	c0008	2724	1	1	0	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	c0009	2724	1	0	0	1	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP4_chr15_43366101_43414771	1/1	c0001	2001	300	79	41	136	10	32	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	c0002	2001	28	7	1	20	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	c0003	2001	2	2	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	c0004	2001	2	0	2	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	c0005	2001	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	c0006	2001	1	0	0	0	0	1	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	c0007	2001	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	c0008	2001	1	0	0	0	0	1	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP5_chr15_22994177_23044569	0/1	c0001	3075	241	58	43	87	14	38	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0002	3075	75	4	4	63	0	4	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0003	3075	11	9	2	0	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0004	3075	9	9	0	0	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0005	3075	3	3	0	0	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0006	3075	2	0	2	0	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0007	3075	2	0	0	2	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0008	3075	1	0	0	1	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0009	3075	1	0	1	0	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0010	3075	1	0	0	0	0	1	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0011	3075	1	0	0	0	0	1	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0012	3075	1	0	0	1	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0013	3075	1	0	0	1	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0014	3075	1	0	0	1	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	c0015	3075	1	1	0	0	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP6_chr22_50212694_50250023	0/0	c0001	5460	69	1	5	53	3	7	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0002	5460	62	7	10	32	1	12	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0003	5460	62	5	8	39	1	9	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0004	5460	43	2	11	26	2	2	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0005	5460	39	19	11	8	0	1	copy fasta	TUBGCP6	chr22	50212694	50250023