JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BIRC7_chr20_63230905_63245495	0/0	c0015	897	1	0	0	0	0	1	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0016	897	1	0	0	1	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0017	897	1	0	1	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0018	897	1	0	0	0	0	1	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0019	943	1	0	0	1	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0020	897	1	1	0	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	c0021	898	1	1	0	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIVM_chr13_102794119_102846533	1/1	c0001	1512	389	81	74	182	14	36	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	c0002	1512	11	8	3	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	c0003	1512	1	1	0	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	c0004	1512	1	0	0	0	0	1	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	c0005	1512	1	0	0	0	0	1	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	c0006	1512	1	0	1	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BLACAT1_chr1_205429886_205461045	1/1	c0001	102	382	89	79	150	16	46	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	c0002	102	8	8	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	c0003	102	1	0	1	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	c0004	102	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	c0005	91	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	c0006	102	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLCAP_chr20_37512417_37532876	1/1	c0001	264	404	98	80	176	10	38	copy fasta	BLCAP	chr20	37512417	37532876
BLID_chr11_122110340_122121215	1/1	c0001	327	428	92	70	202	16	46	copy fasta	BLID	chr11	122110340	122121215
BLID_chr11_122110340_122121215	0/0	c0002	327	6	6	0	0	0	0	copy fasta	BLID	chr11	122110340	122121215
BLK_chr8_11489387_11569599	0/0	c0001	1518	160	32	29	77	6	16	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/1	c0002	1518	61	14	26	5	2	13	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0003	1518	36	12	3	7	2	12	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	1/0	c0004	1518	13	7	1	3	0	1	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0005	1518	8	8	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0006	1518	6	6	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0007	1518	5	5	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0008	1518	4	0	1	0	1	2	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0009	1518	3	3	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0010	1518	2	0	0	0	0	2	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0011	1518	2	2	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0012	1518	1	1	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0013	1518	1	1	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0014	1518	1	1	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0015	1518	1	1	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0016	1518	1	0	0	0	1	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0017	1518	1	0	0	1	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0018	1518	1	0	0	1	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	c0019	1518	1	1	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLMH_chr17_30243203_30296944	1/0	c0001	1368	191	64	44	55	7	20	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/1	c0002	1368	92	17	26	31	5	12	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	c0003	1368	7	6	1	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	c0004	1368	1	0	0	1	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	c0005	1368	1	0	0	1	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	c0006	1368	1	1	0	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	c0007	1368	1	1	0	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	c0008	1368	1	0	1	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	c0009	1368	1	0	0	1	0	0	copy fasta	BLMH	chr17	30243203	30296944