JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUBGCP6_chr22_50212694_50250023	0/0	c0056	5460	1	0	0	0	1	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0057	5460	1	0	0	0	0	1	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0058	5460	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0059	5460	1	0	0	0	0	1	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0060	5460	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0061	5460	1	0	0	0	0	1	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0062	5460	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0063	5460	1	0	0	0	0	1	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0064	5460	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0065	5460	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0066	5460	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0067	5460	1	0	1	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0068	5460	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0069	5460	1	0	0	0	1	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0070	5460	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0071	5460	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0072	5460	1	0	0	1	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0073	5460	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0074	5460	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0075	5460	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	c0076	5460	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUB_chr11_8076211_8111243	1/0	c0001	1521	242	58	33	110	9	31	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/1	c0002	1521	182	31	33	100	0	17	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0003	1521	7	0	7	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0004	1521	6	6	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0005	1521	5	0	0	5	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0006	1521	4	4	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0007	1521	2	0	0	2	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0008	1521	2	0	0	0	1	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0009	1521	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0010	1521	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0011	1521	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0012	1521	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0013	1521	1	0	0	0	0	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	c0014	1521	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUFM_chr16_28837411_28851348	1/1	c0001	1368	376	67	60	191	12	44	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	c0002	1368	17	16	1	0	0	0	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	c0003	1368	1	0	0	1	0	0	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	c0004	1368	1	1	0	0	0	0	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	c0005	1368	1	0	1	0	0	0	copy fasta	TUFM	chr16	28837411	28851348
TUFT1_chr1_151535309_151588583	1/1	c0001	1173	323	68	56	147	10	40	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	c0002	1173	28	11	9	7	0	1	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	c0003	1173	6	6	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	c0004	1173	3	0	0	3	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	c0005	1173	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	c0006	1173	1	0	0	1	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	c0007	1173	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	c0008	1173	1	0	1	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	c0009	1173	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	c0010	1173	1	0	0	0	0	1	copy fasta	TUFT1	chr1	151535309	151588583