JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUG1_chr22_30964265_30984395	1/1	c0001	462	437	91	82	202	18	42	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	c0002	462	1	1	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TULP1_chr6_35492874_35517896	0/0	c0001	1629	185	40	36	93	3	13	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/1	c0002	1629	156	36	29	67	7	16	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	1/0	c0003	1629	47	0	7	26	4	9	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	c0004	1629	14	10	2	0	1	1	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	c0005	1629	5	3	1	0	1	0	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	c0006	1629	1	0	1	0	0	0	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	c0007	1629	1	0	0	0	0	1	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	c0008	1629	1	0	0	0	0	1	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	c0009	1629	1	0	0	0	0	1	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	c0010	1629	1	0	0	1	0	0	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	c0011	1629	1	1	0	0	0	0	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	c0012	1629	1	0	0	1	0	0	copy fasta	TULP1	chr6	35492874	35517896
TULP2_chr19_48875967_48903744	1/1	c0001	1563	266	41	52	137	9	25	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0002	1563	64	26	13	20	3	2	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0003	1563	7	1	2	0	0	4	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0004	1563	7	7	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0005	1563	4	3	1	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0006	1563	3	0	0	3	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0007	1563	2	1	0	1	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0008	1563	2	2	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0009	1563	2	1	0	0	0	1	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0010	1563	1	1	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0011	1236	1	1	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0012	1563	1	1	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0013	1563	1	0	0	0	0	1	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0014	1563	1	0	0	1	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0015	1563	1	0	0	0	0	1	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	c0016	1563	1	1	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP3_chr12_2885891_2946138	1/1	c0001	1329	265	71	49	112	7	24	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0002	1329	85	15	16	39	5	10	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0003	1329	7	6	1	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0004	1329	3	0	0	3	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0005	1329	2	2	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0006	1329	2	2	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0007	1329	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0008	1329	1	0	1	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0009	1329	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0010	1329	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0011	1329	1	1	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0012	1329	1	1	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0013	1329	1	0	1	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	c0014	1329	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP4_chr6_158307465_158516828	0/0	c0001	4632	77	17	19	29	5	7	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0002	4632	59	1	14	38	1	5	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0003	4632	18	7	1	7	0	3	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0004	4632	16	0	7	6	2	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0005	4632	9	3	0	5	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0006	4632	8	1	2	0	1	4	copy fasta	TULP4	chr6	158307465	158516828