JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TULP4_chr6_158307465_158516828	0/0	c0007	4632	6	2	0	4	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0008	4632	6	4	0	2	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0009	4632	5	0	3	0	0	2	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0010	4632	5	1	2	0	1	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0011	4632	5	4	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/1	c0012	4632	4	0	1	2	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0013	4632	3	3	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0014	4632	3	2	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0015	4632	3	3	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0016	4632	2	0	0	2	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0017	4632	2	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0018	4632	2	0	0	1	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0019	4632	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0020	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0021	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0022	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0023	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0024	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0025	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	1/0	c0026	4632	1	0	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0027	4632	1	0	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0028	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0029	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0030	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0031	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0032	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0033	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0034	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0035	4632	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0036	4632	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0037	4632	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0038	4632	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0039	4632	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0040	4632	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0041	4632	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0042	4632	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0043	4632	1	0	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0044	4632	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0045	4632	1	0	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0046	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0047	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0048	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0049	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0050	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0051	4632	1	0	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0052	4632	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	c0053	4632	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TUNAR_chr14_95871832_95930571	1/1	c0001	198	191	22	32	100	13	22	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	c0002	198	146	63	16	52	1	14	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	c0003	198	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571