JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUSC1_chr9_25671969_25683444	0/0	c0001	630	210	39	32	109	5	25	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0002	630	79	26	18	25	1	9	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	1/0	c0003	630	55	1	12	38	1	2	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/1	c0004	630	48	2	9	24	4	8	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0005	633	22	12	3	4	1	2	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0006	630	14	0	2	11	0	1	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0007	630	8	6	2	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0008	630	8	7	1	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0009	633	2	0	0	1	0	1	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0010	633	2	0	0	2	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0011	630	2	0	2	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0012	630	2	0	0	2	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0013	630	1	1	0	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0014	630	1	1	0	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0015	630	1	0	1	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	c0016	630	1	1	0	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC2_chr3_50319909_50333223	1/1	c0001	333	396	90	78	168	14	44	copy fasta	TUSC2	chr3	50319909	50333223
TUSC3_chr8_15535263_15771638	1/1	c0001	1047	356	73	59	166	14	42	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	c0002	1047	12	12	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	c0003	1047	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	c0004	1047	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	c0005	1047	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	c0006	1047	1	0	1	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUT1_chr11_62570052_62596523	0/0	c0001	2625	273	78	66	86	12	31	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0002	2625	4	4	0	0	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0003	2625	3	0	1	0	2	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0004	2625	1	0	0	1	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0005	2625	1	0	0	0	0	1	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0006	2625	1	0	1	0	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0007	2625	1	0	0	1	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0008	2625	1	1	0	0	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0009	2625	1	1	0	0	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0010	2625	1	0	0	1	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0011	2625	1	1	0	0	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0012	2625	1	1	0	0	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT1_chr11_62570052_62596523	0/0	c0013	2625	1	0	0	1	0	0	copy fasta	TUT1	chr11	62570052	62596523
TUT4_chr1_52418275_52558092	1/1	c0001	4938	163	69	18	50	6	18	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0002	4938	48	3	10	29	2	4	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0003	4938	12	9	3	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0004	4938	9	0	0	7	0	2	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0005	4938	3	3	0	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0006	4938	2	2	0	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0007	4938	2	2	0	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0008	4938	1	0	1	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0009	4938	1	1	0	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0010	4938	1	0	0	1	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0011	4938	1	0	0	1	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0012	4938	1	0	1	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0013	4938	1	0	1	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0014	4938	1	1	0	0	0	0	copy fasta	TUT4	chr1	52418275	52558092