JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TUT4_chr1_52418275_52558092	0/0	c0015	4938	1	0	0	1	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0016	4938	1	0	0	0	0	1	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0017	4938	1	0	0	0	0	1	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	c0018	4938	1	0	0	1	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT7_chr9_86282733_86359410	0/0	c0001	4485	170	33	35	74	8	20	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	1/1	c0002	4488	121	17	24	59	7	12	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0003	4488	42	21	4	14	0	3	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0004	4485	6	6	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0005	4485	5	4	1	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0006	4485	4	4	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0007	4488	2	0	1	0	1	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0008	4488	1	0	0	1	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0009	4485	1	0	1	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0010	4485	1	0	0	1	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0011	4488	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0012	4485	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0013	4485	1	0	0	0	0	1	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0014	4485	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0015	4485	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0016	4485	1	0	0	0	0	1	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0017	4485	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0018	4488	1	0	0	0	0	1	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	c0019	4488	1	0	0	1	0	0	copy fasta	TUT7	chr9	86282733	86359410
TVP23A_chr16_10761675_10823794	1/1	c0001	642	403	96	78	169	16	42	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	c0002	642	2	2	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	c0003	642	2	0	0	2	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	c0004	642	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	c0005	642	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	c0006	642	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23B_chr17_18776183_18811714	0/0	c0001	618	303	55	61	147	11	29	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	1/1	c0002	618	68	10	14	30	6	6	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	c0003	618	63	27	7	17	1	11	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	c0004	618	2	2	0	0	0	0	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	c0005	618	1	1	0	0	0	0	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	c0006	618	1	1	0	0	0	0	copy fasta	TVP23B	chr17	18776183	18811714
TVP23C_chr17_15531980_15568483	0/0	c0001	612	219	53	33	118	7	8	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	1/1	c0002	612	199	42	39	81	9	26	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	c0003	612	2	0	0	2	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	c0004	612	2	2	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	c0005	612	1	1	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	c0006	612	1	0	0	1	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TWF1_chr12_43788723_43811317	1/1	c0001	1053	320	77	55	139	11	36	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	c0002	1053	34	13	9	9	1	2	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	c0003	1053	21	0	8	9	0	4	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	c0004	1053	7	4	0	3	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF2_chr3_52223612_52244158	1/1	c0001	1050	285	47	56	130	13	37	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	c0002	1050	57	41	10	2	1	3	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	c0003	1050	7	0	0	7	0	0	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	c0004	1050	6	0	4	1	1	0	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	c0005	1050	4	0	0	4	0	0	copy fasta	TWF2	chr3	52223612	52244158