JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TWF2_chr3_52223612_52244158	0/0	c0006	1050	3	0	0	3	0	0	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	c0007	1050	2	0	1	0	1	0	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	c0008	1050	1	0	1	0	0	0	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	c0009	1050	1	0	0	1	0	0	copy fasta	TWF2	chr3	52223612	52244158
TWIST1_chr7_19110468_19122636	1/1	c0001	609	416	90	73	191	12	48	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	c0002	630	7	1	0	6	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	c0003	609	2	2	0	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	c0004	609	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	c0005	591	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	c0006	609	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	c0007	625	1	1	0	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	c0008	629	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	c0009	633	1	0	1	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	c0010	609	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST2_chr2_238843085_238915534	1/1	c0001	483	338	82	66	136	14	38	copy fasta	TWIST2	chr2	238843085	238915534
TWNK_chr10_100982543_100999403	1/1	c0001	2055	365	78	69	161	16	39	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	c0002	2055	17	12	5	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	c0003	2055	1	0	0	0	0	1	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	c0004	2055	1	1	0	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	c0005	2055	1	1	0	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	c0006	2055	1	0	0	1	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWSG1_chr18_9329773_9407420	1/1	c0001	672	343	78	59	146	14	44	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	c0002	672	4	4	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	c0003	672	4	1	1	0	2	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	c0004	672	1	0	1	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	c0005	672	1	1	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	c0006	672	1	0	1	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TXK_chr4_48061393_48139250	1/1	c0001	1584	169	41	24	78	2	22	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0002	1584	97	22	12	50	2	11	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0003	1584	47	3	19	13	5	7	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0004	1584	11	0	6	0	4	1	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0005	1584	8	8	0	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0006	1584	7	7	0	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0007	1584	6	4	1	0	0	1	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0008	1584	4	4	0	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0009	1584	4	0	0	4	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0010	1584	2	2	0	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0011	1584	2	0	0	2	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0012	1584	1	0	1	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0013	1584	1	0	0	1	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0014	1584	1	1	0	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0015	1584	1	0	1	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	c0016	1584	1	0	0	0	1	0	copy fasta	TXK	chr4	48061393	48139250
TXLNA_chr1_32174675_32203285	1/1	c0001	1641	340	86	56	144	12	40	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	c0002	1641	6	4	2	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	c0003	1641	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	c0004	1641	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	c0005	1641	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	c0006	1641	1	0	0	0	0	1	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	c0007	1641	1	0	0	0	0	1	copy fasta	TXLNA	chr1	32174675	32203285