JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TXLNA_chr1_32174675_32203285	0/0	c0008	1641	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	c0009	1641	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	c0010	1641	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNB_chr6_139235061_139296998	1/0	c0001	2055	102	10	21	48	6	16	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/1	c0002	2055	88	19	21	31	2	14	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0003	2055	20	10	7	0	1	2	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0004	2055	12	0	0	12	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0005	2055	7	5	2	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0006	2055	6	6	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0007	2055	6	6	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0008	2055	6	6	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0009	2055	6	5	0	1	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0010	2055	5	5	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0011	2055	4	2	0	0	1	1	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0012	2055	4	4	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0013	2055	3	0	0	3	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0014	2055	3	3	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0015	2055	2	2	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0016	2055	2	0	0	2	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0017	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0018	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0019	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0020	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0021	2055	1	0	1	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0022	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0023	2055	1	0	0	1	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0024	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0025	2055	1	0	0	0	0	1	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0026	2055	1	0	1	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0027	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0028	2055	1	0	0	1	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0029	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0030	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0031	2055	1	0	1	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0032	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0033	2055	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	c0034	2055	1	0	0	1	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNG_chrX_16781466_16849519	0/1	c0001	1587	191	47	35	92	4	12	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	1/0	c0002	1587	59	7	16	14	7	14	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	c0003	1587	3	3	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	c0004	1587	3	3	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	c0005	1587	2	2	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	c0006	1587	2	2	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	c0007	1586	1	0	0	1	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	c0008	1587	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	c0009	1587	1	0	1	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	c0010	1587	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXN2_chr22_36462046_36486640	1/1	c0001	501	334	91	60	137	10	34	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	c0002	501	2	0	2	0	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	c0003	501	1	1	0	0	0	0	copy fasta	TXN2	chr22	36462046	36486640